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Wednesday, January 11, 2012

Results from Second mthap Comparison / Analysis (per James Lick)

mthap version 0.17pre8 (2011-12-28); haplogroup data version PhyloTree Build 13 (2011-12-28) +mods
raw data source fastafile.txt (591B)
FTDNA predicted haplogroup w
FASTA format was uploaded. Based on the markers found, assuming the following regions were completely sequenced: HVR1 (16001~16569).
Found 569 markers at 569 positions covering 3.4% of mtDNA.

Markers found (shown as differences to rCRS):

HVR2:
CR:
HVR1: 16189C 16223T 16278T 16292T 16295T (16519C)
Derived markers:
CR: 2758G 3594C 4248T 4580G 5178C 6371C 7028C 8994G 10034T 10238T 10400C 10550A 10873T 11467A 11719G 12612A 12705C 13263A 13368G 13928G 14766C
(Differences to rCRS are in bold. Derived markers are based on using the FTDNA predicted haplogroup to determine the results of the 22 SNP panel of CR markers used.)

Best mtDNA Haplogroup Matches:
1) w
Defining Markers for haplogroup w:
HVR2:
CR:
HVR1:

Marker path from rCRS to haplogroup w (plus extra markers):
H2a2a(rCRS) 16189C 16223T 16278T 16292T 16295T (16519C)

Good Match! Your results also had extra markers for this haplogroup:
Extras(5): 16189C 16223T 16278T 16292T 16295T (16519C)

2) H1(16189)
Defining Markers for haplogroup H1(16189):
HVR2: 263G
CR: 750G 1438G 3010A 4769G 8860G 15326G
HVR1: 16189C

Marker path from rCRS to haplogroup H1(16189) (plus extra markers):
H2a2a(rCRS) 263G 8860G 15326G ⇨ H2a2 750G ⇨ H2a 4769G ⇨ H2 1438G ⇨ H 3010A ⇨ H1 16189C ⇨ H1(16189) 16223T 16278T 16292T 16295T (16519C)

Imperfect Match. Your results contained differences with this haplogroup:
Matches(1): 16189C
Extras(4): 16223T 16278T 16292T 16295T (16519C)
Untested(7): 263 750 1438 3010 4769 8860 15326


2) H1q
Defining Markers for haplogroup H1q:
HVR2: 263G
CR: 750G 1438G 3010A 4769G 4859C 8860G 15326G
HVR1: 16189C

Marker path from rCRS to haplogroup H1q (plus extra markers):
H2a2a(rCRS) 263G 8860G 15326G ⇨ H2a2 750G ⇨ H2a 4769G ⇨ H2 1438G ⇨ H 3010A ⇨ H1 16189C ⇨ H1(16189) 4859C ⇨ H1q 16223T 16278T 16292T 16295T (16519C)

Imperfect Match. Your results contained differences with this haplogroup:
Matches(1): 16189C
Extras(4): 16223T 16278T 16292T 16295T (16519C)
Untested(8): 263 750 1438 3010 4769 4859 8860 15326


3) H1g
Defining Markers for haplogroup H1g:
HVR2: 263G
CR: 750G 1438G 3010A 4769G 8602C 8860G 14212C 15326G
HVR1: 16189C

Marker path from rCRS to haplogroup H1g (plus extra markers):
H2a2a(rCRS) 263G 8860G 15326G ⇨ H2a2 750G ⇨ H2a 4769G ⇨ H2 1438G ⇨ H 3010A ⇨ H1 16189C ⇨ H1(16189) 8602C 14212C ⇨ H1g 16223T 16278T 16292T 16295T (16519C)

Imperfect Match. Your results contained differences with this haplogroup:
Matches(1): 16189C
Extras(4): 16223T 16278T 16292T 16295T (16519C)
Untested(9): 263 750 1438 3010 4769 8602 8860 14212 15326

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